This lesson is still being designed and assembled (Pre-Alpha version)

Introduction to dMRI: Glossary

Key Points

Introduction to Diffusion MRI data
  • dMRI data is represented as a 4-dimensional image (x,y,z,diffusion directional sensitivity)

  • dMRI data is sensitive to a particular direction of diffusion motion. Due to this sensitivity, each volume of the 4D image is sensitive to a particular direction

Preprocessing dMRI data
  • Many different preprocessing pipelines, dependent on how data is acquired

Local fiber orientation reconstruction
  • Provides an estimation of the local (voxel-wise) underlying fiber orientation

  • Local fiber orientation reconstruction is the primer to all dMRI derivatives

Diffusion Tensor Imaging (DTI)
  • DTI is one of the simplest and most common models used

  • Provides information to infer characteristics of axonal fibres

Constrained Spherical Deconvolution (CSD)
  • CSD uses the information along more gradient encoding directions

  • It allows to resolve complex fiber configurations, such as crossings

Tractography
  • Provides an estimation of the long range underlying fiber arrangement

  • Tractography is central to estimate and provide measures of the white matter neuroanatomy

Local tractography
  • Local tractography uses local orientation information obtained from diffusion MRI data

  • Tractography requires seeds to begin tracking and a stopping criterion for termination

Deterministic tractography
  • Deterministic tractography methods perform tracking in a predictable way

Probabilistic tractography
  • Probabilistic tractography incorporates uncertainty to the tracking process

  • Provides tractograms that explore more white matter axonal fibers

Glossary

Axial Diffusivity
BIDS
Brain Imaging Data Structure
CSA
Constant Solid Angle
CSD
Constrained Spherical Deconvolution
dMRI
diffusion Magnetic Resonance Imaging
DKI
Diffusion Kurtosis Imaging
DSI
Diffusion Spectrum Imaging
DTI
Diffusion Tensor Imaging
DWI
Diffusion-Weighted Imaging
EPI
Echo Planar Imaging
fODF
fiber Orientation Distribution Function
FA
Fractional Anisotropy
FOD
Fiber Orientation Distribution
FRF
Fiber Response Function
GFA
Generalized Fractional Anisotropy
MAPMRI
Mean Apparent Propagator MRI
MD
Mean Diffusivity
ODF
Orientation Distribution Function
PMF
Probability Mass Function
RD
Radial Diffusivity
SD
Spherical Deconvolution
SH
Spherical Harmonics
SHORE
Simple Harmonic Oscillator Based Reconstruction and Estimation